PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1636
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 245aa    MW: 27646.1 Da    PI: 8.9449
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1636genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.25.9e-081059154
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 r++ +  rE+ RRdr+ + f eL   l ++     +K++Ka+iL  +++ +k+L
  Gh_A02G1636 10 RKVQKADREKLRRDRLTEQFLELGNTLDPD----RPKNEKATILVGTIQMLKDL 59
                 5677889********************997....79****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.553959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-51059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-101082IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.42E-51063No hitNo description
SuperFamilySSF474591.83E-101078IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00181565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEAEDPIAAR KVQKADREKL RRDRLTEQFL ELGNTLDPDR PKNEKATILV GTIQMLKDLT  60
AEVNRLKAER SSLAEESREL TQENNELREE KASVKADIEN LTVQYQQRRM MVFPWTGIDF  120
SSVMAPPYPY PVPLPVTTGP IIMHPSLQPY PFFGNHNPGA INNPCSTFMP YSTTTSNPLI  180
EQPSSQYTSS SHTSGKRDSK SKSADHQRGS NRESNGSNNV RTKVELKNPG SSTNEVRFII  240
PQRML
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469334.11e-146PREDICTED: transcription factor bHLH121-like
TrEMBLA0A0D2REQ41e-147A0A0D2REQ4_G
STRINGGLYMA07G26910.11e-102(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-56bHLH family protein